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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015900203.1_cds_XP_016450231.1_44705
CDS Infomation

[gene=LOC107775074] [db_xref=GeneID:107775074] [protein=protein VASCULAR ASSOCIATED DEATH 1, chloroplastic] [protein_id=XP_016450231.1] [location=complement(join(48484..48735,49862..50139,50270..50312,50403..50464,52796..52895,54932..54998,69658..69712,69817..69903,70040..70127,70246..70286,72783..72967,73041..73135,74430..74528,74674..74769,75908..75973,76153..76203,78040..78099,78394..78582))] [gbkey=CDS]
Sequence

ATGGCTGCCGCCGTGACCGAGAAAATTATGTCGCCGTCGCCTCCGCCCTCGCAACACATG
CATCTGTCGCCTTCCACTTCCCGGCGTGGCCTTGACGCCGCCTCCGATACTGATGCTCTC
GATCGCCGCCCTTCCCTTGATCTTTCCTCTGCTTCTTCCCCTAGCCCAACACGATTATCT
GATGCTCAGAATCAGCTGTTTGTGAAGAGTGAAGAGTATCGACAACTGTTCCGTTTACCG
CCCGATGAAGTCCTGGTTCAAGATTTTAACTGTGCGCTGCAAGAGAGTTTTCTACTTCAG
GGTCATATGTACCTCTTTGGCCATTATATTTGCTTTTATTCCAACCTCTTCGGCTTTGAG
ACAAAGAAAATAATACATTTTCATGAGATCACGTCAGTACGAAGAGCTAAAGCTGCGGCC
ATATTCCCGACAGCAATAGAAATAGTAGCCGGAGAAAAGAAGTACTTTTTTACATCTTTC
CTGTCCCGAGATGAAGCTTTTAAGCTTATCAATGATGGTTGGCTACAACACAATGGTGCA
GCGGAAGAGTCTACAGATCTGGAGCCAAAATCTGATCTAAACAGTCAAGATAGTGGAATA
CCAGAAGGAACAGATAGTTTCAGGCAGGCTATGGAAGGGGTAGAATCCCTCGAAAGGAAT
AAGGATGATACAGTACAGGAAGACTCAAAGCCCTTGGCCAATGGCGAATTTGAAATTGTA
TCAAAGCCTTTAGGATTGCAGCGCAATGTGGAAGAAAAAGCAGTTATTGTTCAAAGTACT
GATTGCTCCTCTTCTGGGAGGTCCTCAGCTTTGAAGCAGGAGGATTCAGATGCACCTCGG
GTCCCTGAATGCTTTACACTTGTTGCAGAGGCCAAGTTTCCGGTTACGGTTGAGAAGTTC
TTTGAACTCTTCATTTCAGATGACGGTATTGCTTTTCAGGAGTCATTCCGTAGAAAATGT
GGTGATAAAGATTTTAAGTGCACACAGTGGCGTCCTCATGAAGAACTTGGGCACTCTCGT
AATTGGTCGTTTCAGCATCCTATTAAATTCTATTTAGGTGCAAAATTTGGTGGCTGCCAT
GAGGTACAGAACTATCGTTTTTATAGAAACAGTCACCTGGTGATTGAGACATCACAAGAA
GTTAGTGATGTTCCTTTTGCAGATTATTTTCGAGTGCAGGGTTTTTGGGATGTGGAGAAG
GATCACGATGAACCAGTAGGAGGCTGCAGTTTGAAGGTGTACGTAAATGTGGCCTTTTCA
AAGAAAACCATGTTTAGAGGGAAGATAGTGCAGTCTACTGTTGATGAATGTCGAGACGTG
TATGCAATATGGATTGCCCTTGCACATGAACTGTTGAAGCAAAAGAAGTTAGAGAAGGAA
GAAGCCGGTGGTCATGCTGCTAATGTGGTAACAAGTGCTCAGCAGAAAGAAAGTTCTGAA
CATGTGGAAATATTAGACGGGGCAAGTGATGAAGTTAGGTCACAAACACTGCCACTCAAC
CAGCTAGCTGCTGATTCCCTGCGGGGTAGTTGTAGCAGTACCGTCTCTGTTACTTCCTTG
TGTAGAAATTTCATGGTTAAGTGTTCATCATCTTTCAAATCTCAAAGCCAGGTTTCCATT
CTTATAGTGATCACCATTGCTGTGATCCTGCTCTTAATGCAGATGAGCATACTCGTGTTA
TTAGGTAGACCTCAGCACGTCCACGTGATACCTCAAGGGGACTGCACAGGTAGCATGTAT
CGACTGGGAGATAGGGGTATAGACACACTAGCCTTTCTGGATAAACAGATTAGTCATCTC
AAAGAGGAGATGGTTATGGTCGAAACACTGCTCGGCAAAATGCAGCAGGAGCATACACTT
CTAAACACGAAATTGAAAGAGTTTGAGCGCCTACGGAAGCACCAGAAAGGATAA

Peptide Sequence

PEP ID

XP_016450231.1
PEP Infomation

PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic [Nicotiana tabacum]
Sequence

MAAAVTEKIMSPSPPPSQHMHLSPSTSRRGLDAASDTDALDRRPSLDLSSASSPSPTRLS
DAQNQLFVKSEEYRQLFRLPPDEVLVQDFNCALQESFLLQGHMYLFGHYICFYSNLFGFE
TKKIIHFHEITSVRRAKAAAIFPTAIEIVAGEKKYFFTSFLSRDEAFKLINDGWLQHNGA
AEESTDLEPKSDLNSQDSGIPEGTDSFRQAMEGVESLERNKDDTVQEDSKPLANGEFEIV
SKPLGLQRNVEEKAVIVQSTDCSSSGRSSALKQEDSDAPRVPECFTLVAEAKFPVTVEKF
FELFISDDGIAFQESFRRKCGDKDFKCTQWRPHEELGHSRNWSFQHPIKFYLGAKFGGCH
EVQNYRFYRNSHLVIETSQEVSDVPFADYFRVQGFWDVEKDHDEPVGGCSLKVYVNVAFS
KKTMFRGKIVQSTVDECRDVYAIWIALAHELLKQKKLEKEEAGGHAANVVTSAQQKESSE
HVEILDGASDEVRSQTLPLNQLAADSLRGSCSSTVSVTSLCRNFMVKCSSSFKSQSQVSI
LIVITIAVILLLMQMSILVLLGRPQHVHVIPQGDCTGSMYRLGDRGIDTLAFLDKQISHL
KEEMVMVETLLGKMQQEHTLLNTKLKEFERLRKHQKG

Transcript Sequence

Gene sequence data has not been registered.